Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALC56_15056WD repeat-containing protein 6. (1064 aa)    
Predicted Functional Partners:
ALC56_11183
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
   
 
 0.988
ALC56_04343
U3 small nucleolar RNA-associated protein 15 like protein.
   
    0.942
ALC56_12067
Histone chaperone asf1.
   
    0.941
ALC56_01351
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.925
ALC56_04358
Protein E(Sev)2B.
    
 0.898
ALC56_03722
Nucleolar protein 56.
   
    0.869
ALC56_08721
G2/M phase-specific E3 ubiquitin-protein ligase.
    
   0.863
ALC56_00092
Structural maintenance of chromosomes protein 1A.
   
    0.858
ALC56_11863
Structural maintenance of chromosomes protein.
   
    0.858
ALC56_07973
Uncharacterized protein.
   
   0.857
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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