Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALC56_15004Uncharacterized protein. (276 aa)    
Predicted Functional Partners:
ALC56_09622
BRCA1-associated RING domain protein 1.
    
 0.699
ALC56_01898
Ubiquitin-60S ribosomal protein L40.
    
  0.531
ALC56_01926
LYR motif-containing protein 4; Belongs to the complex I LYR family.
    
 
 0.504
ALC56_02044
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.500
ALC56_06548
BRCA1-A complex subunit MERIT40.
    
 0.490
ALC56_11818
Ubiquitin-40S ribosomal protein S27a.
    
  0.475
ALC56_10170
Gamma-glutamylcyclotransferase.
    
  0.475
ALC56_11898
Lys-63-specific deubiquitinase BRCC36.
    
  0.465
ALC56_04898
Mitochondrial import receptor subunit TOM40 like protein 1.
    
 0.465
ALC56_03544
26S proteasome non-ATPase regulatory subunit 14.
    
  0.465
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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