Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALC56_15029Telomerase Cajal body protein 1. (489 aa)    
Predicted Functional Partners:
ALC56_03545
H/ACA ribonucleoprotein complex subunit 4.
    
 0.998
ALC56_06041
H/ACA ribonucleoprotein complex subunit 2-like protein.
    
 0.994
ALC56_08590
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
    
 0.993
ALC56_12425
H/ACA ribonucleoprotein complex subunit 3.
    
 0.991
ALC56_07199
T-complex protein 1 subunit beta.
    
 0.885
ALC56_11423
E3 ubiquitin-protein ligase RNF8-B.
    
 
 0.865
ALC56_09097
Putative tRNA pseudouridine synthase 2.
    
 0.856
ALC56_11551
Tyrosine--tRNA ligase.
      
 0.836
ALC56_11164
Fanconi anemia group J protein like protein.
   
 
 0.796
ALC56_05248
Regulator of telomere elongation helicase 1 homolog; ATP-dependent DNA helicase implicated in DNA repair and the maintenance of genomic stability. Acts as an anti-recombinase to counteract toxic recombination and limit crossover during meiosis. Regulates meiotic recombination and crossover homeostasis by physically dissociating strand invasion events and thereby promotes noncrossover repair by meiotic synthesis dependent strand annealing (SDSA) as well as disassembly of D loop recombination intermediates.
   
 
 0.796
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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