Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALC56_14969HTH_48 domain-containing protein. (180 aa)    
Predicted Functional Partners:
ALC56_06560
Chromodomain Y-like protein.
    
 0.710
ALC56_07743
Lysine-specific demethylase 6A.
    
 0.573
ALC56_09191
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.484
ALC56_13973
Polycomb protein eed-A.
    
 0.480
ALC56_05346
Polycomb protein Suz12.
    
 0.475
ALC56_01448
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.473
ALC56_04128
Retinoblastoma-binding protein 5.
    
 0.472
ALC56_11244
Putative histone-binding protein Caf1.
    
 0.471
ALC56_12815
Histone H2A; Belongs to the histone H2A family.
    
 0.462
ALC56_09460
Histone H3; Belongs to the histone H3 family.
    
 0.459
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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