STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_09515HTH_48 domain-containing protein. (188 aa)    
Predicted Functional Partners:
ALC56_13973
Polycomb protein eed-A.
    
 0.690
ALC56_09191
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.683
ALC56_05346
Polycomb protein Suz12.
    
 0.674
ALC56_07743
Lysine-specific demethylase 6A.
    
 0.667
ALC56_11244
Putative histone-binding protein Caf1.
    
 0.662
ALC56_12815
Histone H2A; Belongs to the histone H2A family.
    
 0.619
ALC56_11323
PHD finger protein 20-like protein 1.
   
 0.615
ALC56_01898
Ubiquitin-60S ribosomal protein L40.
    
  0.596
ALC56_04128
Retinoblastoma-binding protein 5.
    
 0.588
ALC56_01448
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.588
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.