STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_06987Nucleoprotein TPR. (2336 aa)    
Predicted Functional Partners:
ALC56_00525
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.985
ALC56_03672
E3 SUMO-protein ligase RanBP2.
   
 0.984
ALC56_14140
E3 SUMO-protein ligase RanBP2.
   
 0.981
ALC56_07811
Nuclear pore protein.
   
 0.969
ALC56_08719
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.967
ALC56_04592
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.962
ALC56_14096
Nucleoporin_N domain-containing protein.
   
 0.943
ALC56_09188
Uncharacterized protein.
   
 0.943
ALC56_00011
Uncharacterized protein.
   
 0.938
ALC56_14113
Nuclear pore complex protein Nup98-Nup96.
   
 0.938
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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