STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_06948Sorting nexin-30. (428 aa)    
Predicted Functional Partners:
ALC56_07211
Sorting nexin-4.
  
 
0.991
ALC56_04928
Cyclin-G-associated kinase.
    
 0.962
ALC56_12393
Sorting nexin; Involved in several stages of intracellular trafficking.
   
0.960
ALC56_12583
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.943
ALC56_13564
Vacuolar protein sorting-associated protein 26.
    
 
 0.940
ALC56_12163
Synaptobrevin.
    
 0.883
ALC56_12164
Synaptobrevin.
    
 0.883
ALC56_02951
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 
 0.857
ALC56_00077
Vacuolar protein sorting-associated protein 29.
   
 
 0.813
ALC56_14272
Sortilin-related receptor.
    
 0.803
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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