ALC56_01331 protein (Trachymyrmex septentrionalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALC56_01331

Uncharacterized protein. (130 aa)

Predicted Functional Partners:

ALC56_03988

0.935

ALC56_06019

0.751

ALC56_12038

0.747

ALC56_05004

0.747

ALC56_13324

0.743

ALC56_09820

0.724

ALC56_12407

0.723

ALC56_10521

0.659

ALC56_07403

0.659

ALC56_05384

0.659

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_01331	ALC56_03988	A0A151K0I2	A0A151JYW4	Uncharacterized protein.	Serine/threonine-protein phosphatase dullard like protein.	0.935
ALC56_01331	ALC56_05004	A0A151K0I2	A0A195FL28	Uncharacterized protein.	CTD small phosphatase-like protein 2.	0.747
ALC56_01331	ALC56_05384	A0A151K0I2	A0A195FKB3	Uncharacterized protein.	Protein retinal degeneration B.	0.659
ALC56_01331	ALC56_06019	A0A151K0I2	A0A195FGM1	Uncharacterized protein.	Ubiquitin-like domain-containing CTD phosphatase 1.	0.751
ALC56_01331	ALC56_07403	A0A151K0I2	A0A195FD84	Uncharacterized protein.	Phosphatidylinositol transfer protein beta isoform.	0.659
ALC56_01331	ALC56_09820	A0A151K0I2	A0A151JU80	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.724
ALC56_01331	ALC56_10521	A0A151K0I2	A0A195F4N3	Uncharacterized protein.	Cytoplasmic phosphatidylinositol transfer protein 1.	0.659
ALC56_01331	ALC56_12038	A0A151K0I2	A0A195EZI6	Uncharacterized protein.	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1.	0.747
ALC56_01331	ALC56_12407	A0A151K0I2	A0A195EYG3	Uncharacterized protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.723
ALC56_01331	ALC56_13324	A0A151K0I2	A0A195EX40	Uncharacterized protein.	Phosphatidate phosphatase LPIN2.	0.743
ALC56_03988	ALC56_01331	A0A151JYW4	A0A151K0I2	Serine/threonine-protein phosphatase dullard like protein.	Uncharacterized protein.	0.935
ALC56_03988	ALC56_05384	A0A151JYW4	A0A195FKB3	Serine/threonine-protein phosphatase dullard like protein.	Protein retinal degeneration B.	0.760
ALC56_03988	ALC56_07403	A0A151JYW4	A0A195FD84	Serine/threonine-protein phosphatase dullard like protein.	Phosphatidylinositol transfer protein beta isoform.	0.760
ALC56_03988	ALC56_10521	A0A151JYW4	A0A195F4N3	Serine/threonine-protein phosphatase dullard like protein.	Cytoplasmic phosphatidylinositol transfer protein 1.	0.760
ALC56_03988	ALC56_12407	A0A151JYW4	A0A195EYG3	Serine/threonine-protein phosphatase dullard like protein.	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II.	0.410
ALC56_03988	ALC56_13324	A0A151JYW4	A0A195EX40	Serine/threonine-protein phosphatase dullard like protein.	Phosphatidate phosphatase LPIN2.	0.987
ALC56_05004	ALC56_01331	A0A195FL28	A0A151K0I2	CTD small phosphatase-like protein 2.	Uncharacterized protein.	0.747
ALC56_05004	ALC56_05384	A0A195FL28	A0A195FKB3	CTD small phosphatase-like protein 2.	Protein retinal degeneration B.	0.760
ALC56_05004	ALC56_07403	A0A195FL28	A0A195FD84	CTD small phosphatase-like protein 2.	Phosphatidylinositol transfer protein beta isoform.	0.760
ALC56_05004	ALC56_10521	A0A195FL28	A0A195F4N3	CTD small phosphatase-like protein 2.	Cytoplasmic phosphatidylinositol transfer protein 1.	0.760