Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ALC56_14593Ligatin. (579 aa)    
Predicted Functional Partners:
ALC56_02181
Guanine nucleotide-binding protein subunit beta-like protein.
    
   0.846
ALC56_01208
Malignant T cell-amplified sequence 1.
    
 
 0.844
ALC56_01679
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.840
ALC56_03192
Pre-mRNA-processing factor 6.
    
   0.830
ALC56_11310
40S ribosomal protein S4.
    
   0.821
ALC56_08963
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
   0.817
ALC56_11984
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
    
   0.812
ALC56_00723
Uncharacterized protein.
    
   0.807
ALC56_04493
Density-regulated protein; Belongs to the DENR family.
    
 
 0.804
ALC56_00976
Protein translation factor SUI1 like protein.
    
 
 0.803
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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