Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALC56_14169Small nuclear ribonucleoprotein Sm D3. (142 aa)    
Predicted Functional Partners:
ALC56_08194
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
ALC56_05540
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
ALC56_14398
Small nuclear ribonucleoprotein F; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
ALC56_05999
Small nuclear ribonucleoprotein G.
   
 0.999
ALC56_10424
Small nuclear ribonucleoprotein-associated protein.
   
 0.998
ALC56_11158
Uncharacterized protein.
   
 0.994
ALC56_12737
Calcium homeostasis endoplasmic reticulum protein.
   
 0.990
ALC56_11399
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.983
ALC56_08199
U6 snRNA-associated Sm-like protein LSm7.
   
 0.970
ALC56_13015
U2 small nuclear ribonucleoprotein B.
   
 0.963
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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