Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_13966WD repeat-containing protein 89. (406 aa)    
Predicted Functional Partners:
ALC56_10154
Uncharacterized protein.
    
   0.892
ALC56_02966
60S ribosomal protein L10a.
    
   0.749
ALC56_12702
Protein SDA1 like protein.
   
    0.746
ALC56_13617
WD repeat-containing protein 43.
   
    0.743
ALC56_03689
DNL-type zinc finger protein.
      
 0.733
ALC56_01380
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
    0.624
ALC56_14089
Something about silencing protein 10.
   
    0.558
ALC56_11740
Ribosome production factor 2 like protein.
   
    0.517
ALC56_01439
Glycerol-3-phosphate dehydrogenase [NAD(+)].
    
   0.510
ALC56_13684
Putative ribosome biogenesis protein RLP24.
   
    0.486
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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