ALC56_12638 protein (Trachymyrmex septentrionalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALC56_12638

WD_REPEATS_REGION domain-containing protein. (3983 aa)

Predicted Functional Partners:

ALC56_08445

0.912

ALC56_14140

0.882

ALC56_11934

0.871

ALC56_07743

0.786

ALC56_04128

0.753

ALC56_01448

0.751

ALC56_00525

0.726

ALC56_14096

0.720

ALC56_08719

0.709

ALC56_07799

0.694

Your Current Organism:

Trachymyrmex septentrionalis

NCBI taxonomy Id: 34720
Other names: T. septentrionalis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALC56_00525	ALC56_07799	A0A195FX98	A0A195FAF0	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.999
ALC56_00525	ALC56_08719	A0A195FX98	A0A195F910	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
ALC56_00525	ALC56_12638	A0A195FX98	A0A195EYP3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	WD_REPEATS_REGION domain-containing protein.	0.726
ALC56_00525	ALC56_14096	A0A195FX98	A0A195ETN2	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin_N domain-containing protein.	0.999
ALC56_00525	ALC56_14140	A0A195FX98	A0A195ETQ3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	E3 SUMO-protein ligase RanBP2.	0.999
ALC56_01448	ALC56_04128	A0A195FV15	A0A151JYI6	Set1/Ash2 histone methyltransferase complex subunit ASH2.	Retinoblastoma-binding protein 5.	0.999
ALC56_01448	ALC56_07743	A0A195FV15	A0A151JVW7	Set1/Ash2 histone methyltransferase complex subunit ASH2.	Lysine-specific demethylase 6A.	0.987
ALC56_01448	ALC56_12638	A0A195FV15	A0A195EYP3	Set1/Ash2 histone methyltransferase complex subunit ASH2.	WD_REPEATS_REGION domain-containing protein.	0.751
ALC56_04128	ALC56_01448	A0A151JYI6	A0A195FV15	Retinoblastoma-binding protein 5.	Set1/Ash2 histone methyltransferase complex subunit ASH2.	0.999
ALC56_04128	ALC56_07743	A0A151JYI6	A0A151JVW7	Retinoblastoma-binding protein 5.	Lysine-specific demethylase 6A.	0.986
ALC56_04128	ALC56_12638	A0A151JYI6	A0A195EYP3	Retinoblastoma-binding protein 5.	WD_REPEATS_REGION domain-containing protein.	0.753
ALC56_07743	ALC56_01448	A0A151JVW7	A0A195FV15	Lysine-specific demethylase 6A.	Set1/Ash2 histone methyltransferase complex subunit ASH2.	0.987
ALC56_07743	ALC56_04128	A0A151JVW7	A0A151JYI6	Lysine-specific demethylase 6A.	Retinoblastoma-binding protein 5.	0.986
ALC56_07743	ALC56_08719	A0A151JVW7	A0A195F910	Lysine-specific demethylase 6A.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.658
ALC56_07743	ALC56_11934	A0A151JVW7	A0A195F0J5	Lysine-specific demethylase 6A.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.915
ALC56_07743	ALC56_12638	A0A151JVW7	A0A195EYP3	Lysine-specific demethylase 6A.	WD_REPEATS_REGION domain-containing protein.	0.786
ALC56_07743	ALC56_14096	A0A151JVW7	A0A195ETN2	Lysine-specific demethylase 6A.	Nucleoporin_N domain-containing protein.	0.621
ALC56_07743	ALC56_14140	A0A151JVW7	A0A195ETQ3	Lysine-specific demethylase 6A.	E3 SUMO-protein ligase RanBP2.	0.847
ALC56_07799	ALC56_00525	A0A195FAF0	A0A195FX98	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
ALC56_07799	ALC56_08719	A0A195FAF0	A0A195F910	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.995