STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_10638Uncharacterized protein. (292 aa)    
Predicted Functional Partners:
ALC56_13564
Vacuolar protein sorting-associated protein 26.
   
 
 0.811
ALC56_08174
FERM domain-containing protein 8.
    
 
 0.719
ALC56_12583
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.618
ALC56_12393
Sorting nexin; Involved in several stages of intracellular trafficking.
    
 
 0.537
ALC56_02907
Sorting nexin-12.
    
 
 0.497
ALC56_00077
Vacuolar protein sorting-associated protein 29.
    
 
 0.433
ALC56_02951
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.433
ALC56_04272
Heparan sulfate glucosamine 3-O-sulfotransferase 5.
      
 0.414
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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