STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_10241Uroporphyrinogen-III synthase. (266 aa)    
Predicted Functional Partners:
ALC56_07294
Porphobilinogen deaminase.
  
 0.996
ALC56_05392
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
  
 0.995
ALC56_15189
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.951
ALC56_13915
Uncharacterized protein.
  
 
 0.940
ALC56_14855
Iodotyrosine dehalogenase 1.
  
 
 0.913
ALC56_04630
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.842
ALC56_05961
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.705
ALC56_12928
Coproporphyrinogen-III oxidase.
     
 0.669
ALC56_02439
Transcription termination factor 2.
  
  
 0.660
ALC56_02740
Bifunctional aminoacyl-tRNA synthetase.
  
  
 0.637
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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