STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_07589Uncharacterized protein. (664 aa)    
Predicted Functional Partners:
ALC56_11934
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.890
ALC56_02937
Survival motor neuron protein.
    
 0.826
ALC56_05540
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.817
ALC56_08194
Small nuclear ribonucleoprotein Sm D2.
    
 0.803
ALC56_08531
DNA polymerase.
   
 0.776
ALC56_01844
Crossover junction endonuclease MUS81.
    
 0.774
ALC56_11158
Uncharacterized protein.
   
 0.747
ALC56_11874
Putative ATP-dependent RNA helicase DDX20.
   
 0.740
ALC56_06849
DNA polymerase delta subunit 2.
    
 0.734
ALC56_05665
DNA polymerase delta small subunit.
    
 0.734
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.