STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALC56_01898Ubiquitin-60S ribosomal protein L40. (128 aa)    
Predicted Functional Partners:
ALC56_15070
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.999
ALC56_11818
Ubiquitin-40S ribosomal protein S27a.
  
0.999
ALC56_11828
60S ribosomal protein L10.
  
 0.999
ALC56_09466
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
 0.999
ALC56_08273
60S ribosomal protein L21.
   
 0.999
ALC56_08210
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
 0.999
ALC56_08141
60S ribosomal protein L5.
   
 0.999
ALC56_06222
Putative ATP-dependent RNA helicase DHX34.
   
 0.999
ALC56_03699
60S ribosomal protein L9.
   
 0.999
ALC56_02529
Uncharacterized protein.
   
 0.999
Your Current Organism:
Trachymyrmex septentrionalis
NCBI taxonomy Id: 34720
Other names: T. septentrionalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.