Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MHO_0060 | dnaA | MHO_0060 | MHO_0040 | Hypothetical protein. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.813 |
MHO_0060 | dnaN | MHO_0060 | MHO_0050 | Hypothetical protein. | DNA polymerase III beta chain. | 0.844 |
MHO_0060 | rpmB | MHO_0060 | MHO_0070 | Hypothetical protein. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.595 |
MHO_0060 | rpmH | MHO_0060 | MHO_0030 | Hypothetical protein. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.417 |
dnaA | MHO_0060 | MHO_0040 | MHO_0060 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | Hypothetical protein. | 0.813 |
dnaA | dnaN | MHO_0040 | MHO_0050 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | DNA polymerase III beta chain. | 0.999 |
dnaA | rpmB | MHO_0040 | MHO_0070 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.555 |
dnaA | rpmH | MHO_0040 | MHO_0030 | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.813 |
dnaN | MHO_0060 | MHO_0050 | MHO_0060 | DNA polymerase III beta chain. | Hypothetical protein. | 0.844 |
dnaN | dnaA | MHO_0050 | MHO_0040 | DNA polymerase III beta chain. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.999 |
dnaN | rpmB | MHO_0050 | MHO_0070 | DNA polymerase III beta chain. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.621 |
dnaN | rpmH | MHO_0050 | MHO_0030 | DNA polymerase III beta chain. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.829 |
rpmB | MHO_0060 | MHO_0070 | MHO_0060 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Hypothetical protein. | 0.595 |
rpmB | dnaA | MHO_0070 | MHO_0040 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.555 |
rpmB | dnaN | MHO_0070 | MHO_0050 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | DNA polymerase III beta chain. | 0.621 |
rpmB | rpmH | MHO_0070 | MHO_0030 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 0.999 |
rpmH | MHO_0060 | MHO_0030 | MHO_0060 | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | Hypothetical protein. | 0.417 |
rpmH | dnaA | MHO_0030 | MHO_0040 | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. | 0.813 |
rpmH | dnaN | MHO_0030 | MHO_0050 | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | DNA polymerase III beta chain. | 0.829 |
rpmH | rpmB | MHO_0030 | MHO_0070 | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.999 |