Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepFOligoendopeptidase F. (612 aa)    
Predicted Functional Partners:
pepP
XAA PRO aminopeptidase.
     
 0.752
potC
Spermidine/putrescine ABC transporter permeaseprotein PotC.
  
    0.488
potB
Spermidine/putrescine ABC transporter permeaseprotein PotB.
  
    0.476
potA
Spermidine/putrescine ABC transporterATP binding protein PotA; Belongs to the ABC transporter superfamily.
       0.473
clp
ClpB; Belongs to the ClpA/ClpB family.
  
  
 0.460
rpmJ
50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
     
 0.460
MAG1280
Conserved hypothetical protein.
       0.449
Your Current Organism:
Mycoplasma agalactiae PG2
NCBI taxonomy Id: 347257
Other names: M. agalactiae PG2, Mycoplasma agalactiae str. PG2, Mycoplasma agalactiae strain PG2
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