gtsC protein (Mycoplasma agalactiae PG2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gtsC

Glycerol ABC transporter, permease component. (274 aa)

Predicted Functional Partners:

gtsB

0.991

gtsB-2

0.963

gtsA

0.944

MAG5060

0.603

glpK

0.582

potA

0.571

MAG5050

0.571

uhpT

0.560

glpF

0.553

MAG2340

0.483

Your Current Organism:

Mycoplasma agalactiae PG2

NCBI taxonomy Id: 347257
Other names: M. agalactiae PG2, Mycoplasma agalactiae str. PG2, Mycoplasma agalactiae strain PG2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAG2340	gtsA	MAG2340	MAG2310	Conserved hypothetical protein.	Glycerol ABC transporter, ATP bindingcomponent.	0.410
MAG2340	gtsB	MAG2340	MAG2320	Conserved hypothetical protein.	Glycerol ABC transporter, permease component.	0.483
MAG2340	gtsC	MAG2340	MAG2330	Conserved hypothetical protein.	Glycerol ABC transporter, permease component.	0.483
MAG5050	MAG5060	MAG5050	MAG5060	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.993
MAG5050	gtsA	MAG5050	MAG2310	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	Glycerol ABC transporter, ATP bindingcomponent.	0.922
MAG5050	gtsB	MAG5050	MAG2320	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	Glycerol ABC transporter, permease component.	0.612
MAG5050	gtsB-2	MAG5050	MAG6540	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	Glycerol transporter subunit B.	0.612
MAG5050	gtsC	MAG5050	MAG2330	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	Glycerol ABC transporter, permease component.	0.571
MAG5050	potA	MAG5050	MAG1250	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine ABC transporterATP binding protein PotA; Belongs to the ABC transporter superfamily.	0.524
MAG5060	MAG5050	MAG5060	MAG5050	ABC transporter permease protein.	ABC transporter ATP binding protein; Belongs to the ABC transporter superfamily.	0.993
MAG5060	gtsA	MAG5060	MAG2310	ABC transporter permease protein.	Glycerol ABC transporter, ATP bindingcomponent.	0.668
MAG5060	gtsC	MAG5060	MAG2330	ABC transporter permease protein.	Glycerol ABC transporter, permease component.	0.603
MAG5060	potA	MAG5060	MAG1250	ABC transporter permease protein.	Spermidine/putrescine ABC transporterATP binding protein PotA; Belongs to the ABC transporter superfamily.	0.662
glpF	glpK	MAG4480	MAG4470	Glycerol facilitator factor; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.995
glpF	gtsB	MAG4480	MAG2320	Glycerol facilitator factor; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Glycerol ABC transporter, permease component.	0.505
glpF	gtsB-2	MAG4480	MAG6540	Glycerol facilitator factor; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Glycerol transporter subunit B.	0.505
glpF	gtsC	MAG4480	MAG2330	Glycerol facilitator factor; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Glycerol ABC transporter, permease component.	0.553
glpK	glpF	MAG4470	MAG4480	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	Glycerol facilitator factor; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.995
glpK	gtsB	MAG4470	MAG2320	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	Glycerol ABC transporter, permease component.	0.508
glpK	gtsB-2	MAG4470	MAG6540	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	Glycerol transporter subunit B.	0.508