MAG4780 protein (Mycoplasma agalactiae PG2) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MAG4780

ATP binding protein. (1071 aa)

Predicted Functional Partners:

MAG5040

0.813

licA

0.786

lsp

0.755

MAG6220

0.754

MAG4660

0.747

MAG4370

0.746

MAG5030

0.742

rpsF

0.723

MAG4430

0.695

oppF-2

0.632

Your Current Organism:

Mycoplasma agalactiae PG2

NCBI taxonomy Id: 347257
Other names: M. agalactiae PG2, Mycoplasma agalactiae str. PG2, Mycoplasma agalactiae strain PG2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MAG4370	MAG4430	MAG4370	MAG4430	ABC transporter permease protein.	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	0.739
MAG4370	MAG4660	MAG4370	MAG4660	ABC transporter permease protein.	Conserved hypothetical protein.	0.751
MAG4370	MAG4780	MAG4370	MAG4780	ABC transporter permease protein.	ATP binding protein.	0.746
MAG4370	MAG5030	MAG4370	MAG5030	ABC transporter permease protein.	P80, predicted lipoprotein.	0.641
MAG4370	MAG5040	MAG4370	MAG5040	ABC transporter permease protein.	Conserved hypothetical protein, predicted lipoprotein.	0.755
MAG4370	MAG6220	MAG4370	MAG6220	ABC transporter permease protein.	Conserved hypothetical protein.	0.656
MAG4370	licA	MAG4370	MAG4800	ABC transporter permease protein.	LicA.	0.459
MAG4370	lsp	MAG4370	MAG2210	ABC transporter permease protein.	Lipoprotein signal peptidase (SPASE II); Belongs to the peptidase A8 family.	0.772
MAG4370	rpsF	MAG4370	MAG2760	ABC transporter permease protein.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.689
MAG4430	MAG4370	MAG4430	MAG4370	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	ABC transporter permease protein.	0.739
MAG4430	MAG4660	MAG4430	MAG4660	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	Conserved hypothetical protein.	0.768
MAG4430	MAG4780	MAG4430	MAG4780	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	ATP binding protein.	0.695
MAG4430	MAG5030	MAG4430	MAG5030	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	P80, predicted lipoprotein.	0.714
MAG4430	MAG5040	MAG4430	MAG5040	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	Conserved hypothetical protein, predicted lipoprotein.	0.705
MAG4430	MAG6220	MAG4430	MAG6220	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	Conserved hypothetical protein.	0.761
MAG4430	licA	MAG4430	MAG4800	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	LicA.	0.497
MAG4430	lsp	MAG4430	MAG2210	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	Lipoprotein signal peptidase (SPASE II); Belongs to the peptidase A8 family.	0.787
MAG4430	oppF-2	MAG4430	MAG1040	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	Oligopeptide ABC transporter, ATP bindingprotein (OppF); Belongs to the ABC transporter superfamily.	0.588
MAG4430	rpsF	MAG4430	MAG2760	Conserved hypothetical protein; Involved in DNA repair and RecF pathway recombination.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.466
MAG4660	MAG4370	MAG4660	MAG4370	Conserved hypothetical protein.	ABC transporter permease protein.	0.751