Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
A0A2P5ABZ5 | A0A2P5B0U7 | Photosystem I PsaH, reaction centre subunit VI. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.978 |
A0A2P5ABZ5 | A0A2P5BEH9 | Photosystem I PsaH, reaction centre subunit VI. | Photosystem I PsaG. | 0.993 |
A0A2P5ABZ5 | A0A2P5BIX1 | Photosystem I PsaH, reaction centre subunit VI. | Small GTP-binding domain containing protein. | 0.746 |
A0A2P5ABZ5 | A0A2P5E3I8 | Photosystem I PsaH, reaction centre subunit VI. | Photosystem I PsaD. | 0.987 |
A0A2P5B0U7 | A0A2P5ABZ5 | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | Photosystem I PsaH, reaction centre subunit VI. | 0.978 |
A0A2P5B0U7 | A0A2P5BEH9 | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | Photosystem I PsaG. | 0.987 |
A0A2P5B0U7 | A0A2P5BIX1 | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | Small GTP-binding domain containing protein. | 0.754 |
A0A2P5B0U7 | A0A2P5E3I8 | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | Photosystem I PsaD. | 0.971 |
A0A2P5BEH9 | A0A2P5ABZ5 | Photosystem I PsaG. | Photosystem I PsaH, reaction centre subunit VI. | 0.993 |
A0A2P5BEH9 | A0A2P5B0U7 | Photosystem I PsaG. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.987 |
A0A2P5BEH9 | A0A2P5BIX1 | Photosystem I PsaG. | Small GTP-binding domain containing protein. | 0.755 |
A0A2P5BEH9 | A0A2P5E3I8 | Photosystem I PsaG. | Photosystem I PsaD. | 0.988 |
A0A2P5BIX1 | A0A2P5ABZ5 | Small GTP-binding domain containing protein. | Photosystem I PsaH, reaction centre subunit VI. | 0.746 |
A0A2P5BIX1 | A0A2P5B0U7 | Small GTP-binding domain containing protein. | Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family. | 0.754 |
A0A2P5BIX1 | A0A2P5BEH9 | Small GTP-binding domain containing protein. | Photosystem I PsaG. | 0.755 |
A0A2P5BIX1 | A0A2P5CB49 | Small GTP-binding domain containing protein. | Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. | 0.831 |
A0A2P5BIX1 | A0A2P5CKD3 | Small GTP-binding domain containing protein. | Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. | 0.880 |
A0A2P5BIX1 | A0A2P5CQ29 | Small GTP-binding domain containing protein. | TRAPP II complex, Trs. | 0.828 |
A0A2P5BIX1 | A0A2P5D1T1 | Small GTP-binding domain containing protein. | Trafficking protein particle complex subunit. | 0.798 |
A0A2P5BIX1 | A0A2P5DL35 | Small GTP-binding domain containing protein. | Transport protein particle (TRAPP) component. | 0.800 |
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