STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5C2Q7Uncharacterized protein. (212 aa)    
Predicted Functional Partners:
A0A2P5B6U2
DNA polymerase delta/II small subunit family.
    
 0.646
A0A2P5A6Z3
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.568
A0A2P5D273
Small nuclear ribonucleoprotein Sm D2.
    
 0.563
A0A2P5BYL4
HMW glutenin.
  
 
  0.559
A0A2P5DM77
DNA repair protein.
    
 0.547
A0A2P5D1B1
LRR domain containing protein.
  
 
  0.541
A0A2P5DF16
FAS1 domain containing protein.
  
  0.541
A0A2P5BYH2
HMW glutenin.
  
 
  0.539
A0A2P5B7Z5
Uncharacterized protein.
  
 
   0.538
A0A2P5BM46
Uncharacterized protein.
  
 
  0.534
Your Current Organism:
Parasponia andersonii
NCBI taxonomy Id: 3476
Other names: P. andersonii, Parasponia andersonii Planch.
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