Genes that are sometimes fused into single open reading frames.
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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5D5Q6
RPA-interacting protein. (271 aa)
Predicted Functional Partners:
A0A2P5AI19
43kDa postsynaptic protein.
0.469
A0A2P5CAF2
43kDa postsynaptic protein.
0.469
A0A2P5CGU2
Peptidase C50, separase.
0.455
Your Current Organism:
Parasponia andersonii
NCBI taxonomy Id: 3476 Other names: P. andersonii, Parasponia andersonii Planch.