STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5D8E9DEAD-box ATP-dependent RNA helicase. (780 aa)    
Predicted Functional Partners:
A0A2P5AYH5
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.789
A0A2P5DKX0
Nop domain containing protein.
  
 
 0.707
A0A2P5BJ07
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.702
A0A2P5A5V6
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.677
A0A2P5AZS8
GTP-binding protein, ribosome biogenesis.
   
  0.675
A0A2P5BT38
GTP binding domain containing protein.
   
  0.675
A0A2P5E2I8
Nucleolar protein.
   
 0.674
A0A2P5CL53
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.661
A0A2P5CL87
ATP-dependent RNA helicase Ski.
   
 0.653
A0A2P5D064
ATP-dependent RNA helicase Ski.
   
 0.653
Your Current Organism:
Parasponia andersonii
NCBI taxonomy Id: 3476
Other names: P. andersonii, Parasponia andersonii Planch.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.