STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN95064.1Hypothetical protein. (58 aa)    
Predicted Functional Partners:
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.688
glpQ2
Glycerophosphoryl diester phosphodiesterase.
       0.552
KRN95059.1
Hypothetical protein.
 
     0.527
KRN95389.1
Hypothetical protein.
   
    0.510
glnR
Hypothetical protein.
       0.509
glnA
Glutamine synthetase.
       0.494
KRN97340.1
Hypothetical protein; Belongs to the UPF0145 family.
   
    0.491
trxA2
Thiol-disulfide isomerase and thioredoxin; Belongs to the thioredoxin family.
   
    0.491
KRN95341.1
Hypothetical protein.
  
    0.463
rpsT
Hypothetical protein; Binds directly to 16S ribosomal RNA.
   
  
 0.440
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.