STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comEADNA uptake protein related DNA-binding protein. (231 aa)    
Predicted Functional Partners:
comEC
ComE operon protein 3.
 
  
 0.877
lon
Hypothetical protein.
     0.858
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
      0.857
KRN94860.1
ComE operon protein 2.
  
    0.814
comFA
Helicase domain-containing protein.
   
  
 0.798
gspE
Type II secretion system protein E.
  
  
 0.715
KRN93578.1
ComG operon protein 2.
  
  
 0.710
KRN95718.1
Hypothetical protein.
   
  
 0.663
KRN96591.1
Hypothetical protein.
  
  
 0.659
KRN93579.1
Hypothetical protein.
   
  
 0.635
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.