STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN96856.1Hypothetical protein. (277 aa)    
Predicted Functional Partners:
KRN96855.1
Hypothetical protein.
 
    0.969
KRN95516.1
Minor structural protein.
 
   0.957
KRN96857.1
Hypothetical protein.
 
     0.949
KRN95518.1
Tape measure protein.
 
    0.887
KRN96851.1
Hypothetical protein.
 
     0.872
KRN96850.1
Hypothetical protein.
 
     0.870
KRN96852.1
Phage major tail protein.
 
     0.867
KRN96860.1
Spore coat protein CotH.
 
     0.835
pi137
Phage capsid protein.
 
     0.828
KRN96858.1
Hypothetical protein.
  
    0.819
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.