STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaDDNA replication protein DnaD. (241 aa)    
Predicted Functional Partners:
dnaI
Primosomal protein DnaI.
 
  
 0.830
KRN96950.1
Hypothetical protein.
 
     0.823
KRN96059.1
DNA-(apurinic or apyrimidinic site) lyase.
  
  
 0.712
KRN94526.1
Replication initiation and membrane attachment protein DnaB.
  
   
 0.705
dinG
Rad3-related DNA helicase; 3'-5' exonuclease.
 
  
 0.702
asnS2
asparaginyl-tRNA synthetase.
  
    0.692
comFA
Helicase domain-containing protein.
  
     0.677
KRN96573.1
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.590
KRN95069.1
Cell division protein FtsI penicillin-binding protein 2.
  
    0.544
recO
Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination.
  
    0.543
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.