Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRN93588.1Hypothetical protein. (235 aa)    
Predicted Functional Partners:
nagD
HAD family haloacid dehalogenase hydrolase; Catalyzes the dephosphorylation of 2-6 carbon acid sugars in vitro; Belongs to the HAD-like hydrolase superfamily. NagD family.
 
  
 0.927
KRN93587.1
Phosphoesterase.
       0.797
KRN94526.1
Replication initiation and membrane attachment protein DnaB.
  
    0.701
KRN93590.1
Integral membrane protein.
       0.683
KRN96573.1
Hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.661
KRN94508.1
ABC transporter permease.
  
     0.651
KRN95094.1
GTP-binding protein YqeH.
  
     0.549
KRN95444.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.529
dnaI
Primosomal protein DnaI.
  
     0.507
KRN93584.1
Adenine-specific methyltransferase.
 
     0.498
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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