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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dps2Stress induced DNA binding protein; Belongs to the Dps family. (180 aa)    
Predicted Functional Partners:
KRN93517.1
Hypothetical protein.
 
  
 0.990
KRN93516.1
Cadmium-exporting ATPase.
 
  
 0.894
KRN95753.1
Transcription regulator.
 
     0.809
KRN93515.1
Hypothetical protein.
 
     0.596
KRN96433.1
Hypothetical protein.
  
    0.570
sip3
Signal peptidase I; Belongs to the peptidase S26 family.
       0.542
hpf
Ribosome-associated protein Y (PSrp-1); Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
    0.509
KRN96328.1
Hypothetical protein.
  
    0.505
KRN93512.1
Lipoprotein.
  
    0.492
KRN97156.1
Hypothetical protein.
  
     0.435
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.