Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
oppA-2ABC-type oligopeptide transport system, periplasmic component. (547 aa)    
Predicted Functional Partners:
oppB
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 0.958
oppC
ABC-type dipeptide oligopeptide nickel transport system, permease component.
 
 0.899
oppF
Oligopeptide abc transporter, atp-binding protein.
 0.889
oppD
ABC-type dipeptide oligopeptide nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.873
oppB-2
ABC-type dipeptide oligopeptide nickel transport system, permease component.
  
 0.816
KRN96372.1
Oligopeptide ABC transporter, oligopeptide-binding protein.
  
  
 
0.711
oppF-2
ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
 0.690
KRN96351.1
ABC transporter, substrate-binding protein, family 5.
    
 0.652
KRN96355.1
ABC-type dipeptide oligopeptide nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
  
 
 0.585
oppC-2
ABC-type dipeptide oligopeptide nickel transport system, permease component.
  
 
 0.539
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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