STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN93404.1Replication protein A. (311 aa)    
Predicted Functional Partners:
KRN93403.1
Hypothetical protein.
       0.785
KRN93135.1
Hypothetical protein.
  
     0.762
KRN93455.1
Replication protein B.
 
     0.681
KRN93396.1
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.541
KRN93397.1
Hypothetical protein.
  
     0.440
KRN93401.1
DNA endonuclease, type III restriction and modification system.
       0.429
KRN93402.1
Type III restriction-modification system methylation subunit.
       0.429
KRN94388.1
Integrase recombinase.
  
     0.419
KRN93400.1
Abi family protein.
       0.406
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.