STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN96554.1Hypothetical protein. (499 aa)    
Predicted Functional Partners:
rfaG
Glycosyltransferase.
  
 
  0.834
KRN96553.1
Hypothetical protein.
       0.773
KRN96552.1
Hypothetical protein.
  
  
 0.703
glf1
UDP-galactopyranose mutase.
  
  
 0.670
KRN94251.1
Hypothetical protein.
 
  
 0.525
galU
UTP-glucose-1-phosphate uridylyltransferase.
    
 0.494
KRN95325.1
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.449
licD
LicD family protein.
 
   
 0.409
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.