Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rfaGGlycosyltransferase. (381 aa)    
Predicted Functional Partners:
KRN96554.1
Hypothetical protein.
  
    0.839
KRN96553.1
Hypothetical protein.
       0.773
KRN96552.1
Hypothetical protein.
  
 
 0.771
KRN95300.1
Glycosyltransferase.
 
  
 0.739
KRN95318.1
Glycosyltransferase.
 
  0.604
KRN96403.1
Glycosyl transferase group 2.
 
 0.596
KRN94114.1
Hypothetical protein.
 
 
 
 0.591
licD
LicD family protein.
   
  0.563
KRN94113.1
Hypothetical protein.
   
 
 0.529
KRN94111.1
Glycosyltransferase.
 
     0.511
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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