rsmC protein (Lactobacillus siliginis) - STRING interaction network

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Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

rsmC

16S RNA methylase. (201 aa)

Predicted Functional Partners:

tadA

0.842

KRN95054.1

0.704

KRN96560.1

0.604

obg

0.556

rplL

0.553

KRN96944.1

0.513

rplJ

0.471

trmD

0.467

nusG

0.456

rplA

0.451

Your Current Organism:

Lactobacillus siliginis

NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN95054.1	KRN96944.1	IV55_GL000334	IV55_GL000819	Hypothetical protein.	Rrna methylase.	0.415
KRN95054.1	rsmC	IV55_GL000334	IV55_GL001078	Hypothetical protein.	16S RNA methylase.	0.704
KRN96560.1	rsmC	IV55_GL001077	IV55_GL001078	Hypothetical protein.	16S RNA methylase.	0.604
KRN96560.1	tadA	IV55_GL001077	IV55_GL001079	Hypothetical protein.	Cytidine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.	0.620
KRN96944.1	KRN95054.1	IV55_GL000819	IV55_GL000334	Rrna methylase.	Hypothetical protein.	0.415
KRN96944.1	obg	IV55_GL000819	IV55_GL002050	Rrna methylase.	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	0.472
KRN96944.1	rplA	IV55_GL000819	IV55_GL000597	Rrna methylase.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.702
KRN96944.1	rplJ	IV55_GL000819	IV55_GL000598	Rrna methylase.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.829
KRN96944.1	rplL	IV55_GL000819	IV55_GL000599	Rrna methylase.	50S ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.676
KRN96944.1	rsmC	IV55_GL000819	IV55_GL001078	Rrna methylase.	16S RNA methylase.	0.513
KRN96944.1	trmD	IV55_GL000819	IV55_GL000809	Rrna methylase.	tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.495
nusG	rplA	IV55_GL000595	IV55_GL000597	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.933
nusG	rplJ	IV55_GL000595	IV55_GL000598	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.976
nusG	rplL	IV55_GL000595	IV55_GL000599	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	50S ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.978
nusG	rsmC	IV55_GL000595	IV55_GL001078	NusG antitermination factor; Participates in transcription elongation, termination and antitermination.	16S RNA methylase.	0.456
obg	KRN96944.1	IV55_GL002050	IV55_GL000819	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	Rrna methylase.	0.472
obg	rplA	IV55_GL002050	IV55_GL000597	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.779
obg	rplJ	IV55_GL002050	IV55_GL000598	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.728
obg	rplL	IV55_GL002050	IV55_GL000599	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	50S ribosomal protein L7 L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.	0.731
obg	rsmC	IV55_GL002050	IV55_GL001078	GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.	16S RNA methylase.	0.556