STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epsBChain length determinant protein. (295 aa)    
Predicted Functional Partners:
epsC
Non-specific protein-tyrosine kinase.
 
 0.997
KRN96569.1
Protein-tyrosine-phosphatase.
 
 
 0.990
KRN95325.1
Undecaprenyl-phosphate galactose phosphotransferase.
 
  
 0.667
KRN94251.1
Hypothetical protein.
 
  
 0.662
KRN95755.1
Transcriptional regulator lytr.
 
  
 0.489
cps1C
Hypothetical protein.
 
  
 0.448
KRN96566.1
Hypothetical protein.
       0.439
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.427
pkn1
Non-specific serine threonine protein kinase.
    
   0.426
KRN96433.1
Hypothetical protein.
    
   0.426
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.