Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KRN96569.1Protein-tyrosine-phosphatase. (258 aa)    
Predicted Functional Partners:
epsC
Non-specific protein-tyrosine kinase.
  
 0.998
epsB
Chain length determinant protein.
 
 
 0.993
KRN95316.1
Hypothetical protein.
  
 
 0.611
cps1C
Hypothetical protein.
 
   
 0.504
glf1
UDP-galactopyranose mutase.
     
 0.489
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
     
 0.472
KRN95325.1
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.435
KRN94251.1
Hypothetical protein.
  
  
 0.435
KRN96571.1
Hypothetical protein.
       0.427
KRN96566.1
Hypothetical protein.
       0.417
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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