gpp protein (Lactobacillus siliginis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gpp

Glycoprotein endopeptidase. (240 aa)

Predicted Functional Partners:

gcp

0.999

KRN96654.1

0.990

rimI1

0.977

rimI

0.953

KRN96704.1

0.688

tadA

0.561

recR

0.552

KRN97176.1

0.530

guaA

0.510

holA

0.502

Your Current Organism:

Lactobacillus siliginis

NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRN96654.1	KRN96704.1	IV55_GL001182	IV55_GL001237	ATP GTP hydrolase.	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	0.912
KRN96654.1	gcp	IV55_GL001182	IV55_GL001099	ATP GTP hydrolase.	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.985
KRN96654.1	gpp	IV55_GL001182	IV55_GL001096	ATP GTP hydrolase.	Glycoprotein endopeptidase.	0.990
KRN96704.1	KRN96654.1	IV55_GL001237	IV55_GL001182	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	ATP GTP hydrolase.	0.912
KRN96704.1	gcp	IV55_GL001237	IV55_GL001099	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.729
KRN96704.1	gpp	IV55_GL001237	IV55_GL001096	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	Glycoprotein endopeptidase.	0.688
KRN97176.1	gpp	IV55_GL000097	IV55_GL001096	uracil-DNA glycosylase family protein.	Glycoprotein endopeptidase.	0.530
gcp	KRN96654.1	IV55_GL001099	IV55_GL001182	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	ATP GTP hydrolase.	0.985
gcp	KRN96704.1	IV55_GL001099	IV55_GL001237	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	0.729
gcp	gpp	IV55_GL001099	IV55_GL001096	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	Glycoprotein endopeptidase.	0.999
gcp	guaA	IV55_GL001099	IV55_GL000523	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.579
gcp	rimI	IV55_GL001099	IV55_GL001098	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	Hypothetical protein; Acetylates the N-terminal alanine of ribosomal protein S18.	0.843
gcp	rimI1	IV55_GL001099	IV55_GL001097	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	Acetyltransferase.	0.854
gpp	KRN96654.1	IV55_GL001096	IV55_GL001182	Glycoprotein endopeptidase.	ATP GTP hydrolase.	0.990
gpp	KRN96704.1	IV55_GL001096	IV55_GL001237	Glycoprotein endopeptidase.	SUA5 family translation factor; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.	0.688
gpp	KRN97176.1	IV55_GL001096	IV55_GL000097	Glycoprotein endopeptidase.	uracil-DNA glycosylase family protein.	0.530
gpp	gcp	IV55_GL001096	IV55_GL001099	Glycoprotein endopeptidase.	Metal-dependent protease with possible chaperone activity; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.	0.999
gpp	guaA	IV55_GL001096	IV55_GL000523	Glycoprotein endopeptidase.	GMP synthase; Catalyzes the synthesis of GMP from XMP.	0.510
gpp	holA	IV55_GL001096	IV55_GL000399	Glycoprotein endopeptidase.	DNA polymerase III, delta subunit.	0.502
gpp	recR	IV55_GL001096	IV55_GL001082	Glycoprotein endopeptidase.	Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.	0.552