STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN96591.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
comFA
Helicase domain-containing protein.
 
  
 0.885
KRN97004.1
DNA protecting protein DprA.
  
 
 0.705
comEC
ComE operon protein 3.
  
  
 0.681
comEA
DNA uptake protein related DNA-binding protein.
  
  
 0.659
hpf
Ribosome-associated protein Y (PSrp-1); Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.626
KRN95474.1
Hypothetical protein.
  
    0.612
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.591
tyrA
Prephenate dehydrogenase.
   
  
 0.584
KRN96589.1
IMPACT family member yvyE.
  
    0.554
KRN93310.1
Adenine guanine phosphoribosyltransferase-like protein; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.503
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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