STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copBCopper transporting atpase. (672 aa)    
Predicted Functional Partners:
KRN93517.1
Hypothetical protein.
 
 
 0.958
copR
Transcription regulator.
  
  
 0.773
KRN97198.1
Regulatory protein ArsR.
  
  
 0.562
KRN96440.1
Metal-dependent regulator.
 
   
 0.499
KRN96627.1
Bilirubin oxidase.
 
  
 0.418
KRN97261.1
Hypothetical protein.
  
    0.414
KRN97262.1
Pyrimidine reductase, riboflavin biosynthesis.
  
    0.414
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.