STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN95470.1ABC-type amino acid transport system, permease component. (215 aa)    
Predicted Functional Partners:
KRN95468.1
Glutamine ABC transporter substrate-binding protein.
 0.998
glnQ4
ABC-type polar amino acid transport system, ATPase component.
 0.997
KRN97349.1
Polar amino acid ABC transporter ATPase.
 0.994
glnQ3
Phosphonate-transporting ATPase.
 0.994
glnQ2
ABC-type polar amino acid transport system, ATPase component.
 0.991
KRN97350.1
Amino acid ABC transporter periplasmic protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.980
KRN95461.1
ABC superfamily ATP binding cassette transporter, ABC protein.
 
 
  0.792
glnH1
Glutamine ABC transporter, substrate binding protein.
 
 0.749
KRN97348.1
Amino acid ABC transporter, permease.
 
  
 
0.746
KRN95409.1
Polar amino acid ABC transporter inner membrane subunit.
  
 
0.685
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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