Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRN95518.1Tape measure protein. (1485 aa)    
Predicted Functional Partners:
KRN95516.1
Minor structural protein.
 
    0.960
KRN95517.1
Hypothetical protein.
 
     0.947
KRN95521.1
Hypothetical protein.
 
     0.890
KRN96856.1
Hypothetical protein.
 
    0.888
KRN95529.1
Portal protein.
 
     0.888
KRN95523.1
Hypothetical protein.
 
     0.876
KRN95527.1
Phage major capsid protein, HK97 family.
 
    0.876
KRN95530.1
Terminase large subunit.
 
     0.861
KRN95531.1
Hypothetical protein.
 
     0.853
pi137
Phage capsid protein.
 
    0.822
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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