STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRN95527.1Phage major capsid protein, HK97 family. (404 aa)    
Predicted Functional Partners:
KRN95529.1
Portal protein.
 
 
 
 0.982
clpP-2
ATP-dependent Clp protease, proteolytic subunit ClpP; Belongs to the peptidase S14 family.
 
    0.952
KRN95523.1
Hypothetical protein.
 
     0.946
KRN95521.1
Hypothetical protein.
 
     0.927
KRN96846.1
Phage-related portal protein.
 
 
 
 0.924
KRN95531.1
Hypothetical protein.
 
     0.903
KRN95530.1
Terminase large subunit.
 
     0.886
KRN95518.1
Tape measure protein.
 
    0.882
mcrA
Phage endonuclease.
 
     0.843
KRN96851.1
Hypothetical protein.
 
     0.830
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.