close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Map1lc3bMicrotubule associated protein 1 light chain 3 beta. (127 aa)    
Predicted Functional Partners:
NBR1
NBR1 autophagy cargo receptor.
   
 0.999
SQSTM1
Sequestosome 1.
   
 0.989
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.986
FUNDC1
FUN14 domain containing 1.
    
 0.982
FYCO1
FYVE and coiled-coil domain containing 1.
   
 
 0.969
OPTN
Optineurin.
   
 0.968
ATG7
Autophagy related 7.
   
 0.962
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
  
 
0.946
ATG12
Autophagy related 12.
   
 0.928
ATG14
Autophagy related 14.
   
 0.923
Your Current Organism:
Chinchilla lanigera
NCBI taxonomy Id: 34839
Other names: C. lanigera, Chinchilla velligera, Mus laniger, long-tailed chinchilla
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.