Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDCD11Programmed cell death 11. (1857 aa)    
Predicted Functional Partners:
KRR1
KRR1 small subunit processome component homolog.
   
 0.999
WDR46
WD repeat domain 46.
   
 0.999
NOP14
NOP14 nucleolar protein.
   
 0.999
UTP20
UTP20 small subunit processome component.
   
 0.999
RPS9
Ribosomal protein S9.
  
 0.998
NOL6
Nucleolar protein 6.
   
 0.998
UTP4
UTP4 small subunit processome component.
   
 0.998
NOC4L
Nucleolar complex associated 4 homolog.
   
 0.998
DDX52
DExD-box helicase 52.
   
 0.998
HEATR1
HEAT repeat containing 1.
   
 0.998
Your Current Organism:
Chinchilla lanigera
NCBI taxonomy Id: 34839
Other names: C. lanigera, Chinchilla velligera, Mus laniger, long-tailed chinchilla
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