Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC102017315Low-density lipoprotein receptor-related protein 1-like. (2095 aa)    
Predicted Functional Partners:
LRPAP1
LDL receptor related protein associated protein 1.
    
 0.990
LDLRAP1
Low density lipoprotein receptor adaptor protein 1.
    
 0.985
CUBN
Cubilin.
   
 0.960
APOE
Apolipoprotein E.
    
 0.939
LRP1
LDL receptor related protein 1.
    
  0.937
LRP1B
LDL receptor related protein 1B.
    
  0.921
MUSK
Muscle associated receptor tyrosine kinase.
    
 0.916
GIPC1
GIPC PDZ domain containing family member 1.
    
 
 0.912
ANKRA2
Ankyrin repeat family A member 2.
    
 0.911
PTCH1
Patched 1.
    
 0.900
Your Current Organism:
Chinchilla lanigera
NCBI taxonomy Id: 34839
Other names: C. lanigera, Chinchilla velligera, Mus laniger, long-tailed chinchilla
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