STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM3Tripartite motif containing 3. (744 aa)    
Predicted Functional Partners:
ACTN4
Actinin alpha 4.
    
 
 0.764
ENSCLAP00000005260
annotation not available
    
  0.763
RPS27A
Ribosomal protein S27a.
    
  0.763
ENSCLAP00000021912
annotation not available
    
  0.763
UBE2D2
Ubiquitin conjugating enzyme E2 D2.
    
 0.652
ENSCLAP00000000060
annotation not available
    
  0.649
ENSCLAP00000002529
annotation not available
    
  0.649
Ube2d3
Ubiquitin conjugating enzyme E2 D3.
    
  0.649
ENSCLAP00000006818
annotation not available
    
  0.649
UBE2D4
Ubiquitin conjugating enzyme E2 D4 (putative).
    
  0.649
Your Current Organism:
Chinchilla lanigera
NCBI taxonomy Id: 34839
Other names: C. lanigera, Chinchilla velligera, Mus laniger, long-tailed chinchilla
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.