Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NP_1352A | NP_1354A | NP_1352A | NP_1354A | CopG domain protein. | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 0.857 |
NP_1352A | NP_1358A | NP_1352A | NP_1358A | CopG domain protein. | NMD3 family protein. | 0.487 |
NP_1352A | ribE | NP_1352A | NP_1356A | CopG domain protein. | Riboflavin synthase. | 0.629 |
NP_1352A | tatC1 | NP_1352A | NP_1348A | CopG domain protein. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.475 |
NP_1352A | tatC2 | NP_1352A | NP_1350A | CopG domain protein. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.712 |
NP_1354A | NP_1352A | NP_1354A | NP_1352A | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | CopG domain protein. | 0.857 |
NP_1354A | NP_1358A | NP_1354A | NP_1358A | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | NMD3 family protein. | 0.487 |
NP_1354A | ribE | NP_1354A | NP_1356A | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Riboflavin synthase. | 0.605 |
NP_1354A | tatC1 | NP_1354A | NP_1348A | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.497 |
NP_1354A | tatC2 | NP_1354A | NP_1350A | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.687 |
NP_1358A | NP_1352A | NP_1358A | NP_1352A | NMD3 family protein. | CopG domain protein. | 0.487 |
NP_1358A | NP_1354A | NP_1358A | NP_1354A | NMD3 family protein. | DUF165 family protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. | 0.487 |
NP_1358A | ribE | NP_1358A | NP_1356A | NMD3 family protein. | Riboflavin synthase. | 0.613 |
NP_1358A | tatC2 | NP_1358A | NP_1350A | NMD3 family protein. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.443 |
NP_4570A | nirK | NP_4570A | NP_1598A | Homolog to sulfate adenylyltransferase small subunit. | Nitrite reductase, copper-containing. | 0.476 |
NP_4570A | tatC2 | NP_4570A | NP_1350A | Homolog to sulfate adenylyltransferase small subunit. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.523 |
nirK | NP_4570A | NP_1598A | NP_4570A | Nitrite reductase, copper-containing. | Homolog to sulfate adenylyltransferase small subunit. | 0.476 |
nirK | tatA1 | NP_1598A | NP_4348A | Nitrite reductase, copper-containing. | Sec-independent protein translocase protein TatA. | 0.437 |
nirK | tatA2 | NP_1598A | NP_4350A | Nitrite reductase, copper-containing. | Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.437 |
nirK | tatC1 | NP_1598A | NP_1348A | Nitrite reductase, copper-containing. | Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. | 0.592 |
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