STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsA2ArsA family ATPase. (317 aa)    
Predicted Functional Partners:
NP_1380A
START domain protein.
       0.648
NP_1820A
Uncharacterized protein.
 
     0.589
NP_1384A
Oxidoreductase (homolog to thioredoxin-disulfide reductase).
       0.553
cstA
Carbon starvation protein CstA.
 
     0.521
pyrF
Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
    
 
 0.481
cdc48c
AAA-type ATPase (CDC48 subfamily).
 
 
 0.465
cdc48b
AAA-type ATPase (CDC48 subfamily).
 
 
 0.462
cdc48a
AAA-type ATPase (CDC48 subfamily).
 
 
 0.460
NP_0994A
Tetratricopeptide repeat protein.
    
 0.439
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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