Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NP_1630A | thrC3 | NP_1630A | NP_1632A | Amine oxidase domain protein. | Threonine synthase. | 0.699 |
hom | ilvA | NP_0302A | NP_1076A | Homoserine dehydrogenase. | Threonine ammonia-lyase. | 0.773 |
hom | ilvC | NP_0302A | NP_2198A | Homoserine dehydrogenase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.683 |
hom | leuD | NP_0302A | NP_2192A | Homoserine dehydrogenase. | 3-isopropylmalate dehydratase small subunit. | 0.509 |
hom | lysC | NP_0302A | NP_0550A | Homoserine dehydrogenase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.955 |
hom | serA1 | NP_0302A | NP_0272A | Homoserine dehydrogenase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.749 |
hom | thrB | NP_0302A | NP_4524A | Homoserine dehydrogenase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.999 |
hom | thrC1 | NP_0302A | NP_5280A | Homoserine dehydrogenase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.873 |
hom | thrC2 | NP_0302A | NP_4464A | Homoserine dehydrogenase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.870 |
hom | thrC3 | NP_0302A | NP_1632A | Homoserine dehydrogenase. | Threonine synthase. | 0.869 |
ilvA | hom | NP_1076A | NP_0302A | Threonine ammonia-lyase. | Homoserine dehydrogenase. | 0.773 |
ilvA | ilvC | NP_1076A | NP_2198A | Threonine ammonia-lyase. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.899 |
ilvA | leuD | NP_1076A | NP_2192A | Threonine ammonia-lyase. | 3-isopropylmalate dehydratase small subunit. | 0.818 |
ilvA | lysC | NP_1076A | NP_0550A | Threonine ammonia-lyase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.581 |
ilvA | serA1 | NP_1076A | NP_0272A | Threonine ammonia-lyase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.542 |
ilvA | thrB | NP_1076A | NP_4524A | Threonine ammonia-lyase. | Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.670 |
ilvA | thrC1 | NP_1076A | NP_5280A | Threonine ammonia-lyase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.962 |
ilvA | thrC2 | NP_1076A | NP_4464A | Threonine ammonia-lyase. | Threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine. | 0.963 |
ilvA | thrC3 | NP_1076A | NP_1632A | Threonine ammonia-lyase. | Threonine synthase. | 0.960 |
ilvC | hom | NP_2198A | NP_0302A | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | Homoserine dehydrogenase. | 0.683 |
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